Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEALKSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNELLKLVDETTGIRLH-----FIRQSHPRGLGDAVLQAKAFVGNEPFVVMLGDDLMDITNNKVIPLTKQLINDFEATHASTIAVMEVPHEDVSAYGVIAPQGE-GVNGLYSVNTFVEKPSPEEAPSNLAIIGRYLLTPEIFNILETQKPGAGNEIQLTDAIDTLNKTQRVFARKFTGDRYDVGDKFGFMKTSIDYALQHPQVKDDLKKYIIDLGKSLEKTSKK |
2UX8 Chain:D ((14-293)) | --LRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS-----LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCL----KQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGV--LTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQG-------QLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPDLEPAVRAFAVKALG-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2UX8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117613 for 2113 contacts (-55.7/contact) +
2D Compatibility (PS) -28841 + (NN) -11299 + (LL) 1204
1D Compatibility (HY) -27200 + (ID) 6250
Total energy: -189999.0 ( -89.92 by residue)
QMean score : 0.525
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