Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVYENKEELKKEISKTFEKYIMEFNNIPENLKDKRIDEVDRTPAENLSYQVGWTNLVLKWEEDERKGLQVKTPSDKFKWNQLGELYQWFTDTYAHLSLQELKAKLNENINSIYAMIDLLSEEELFEAHMRKW-ADEATKTATWEVYKFIHVNTVAPFGTFRTKIRKWKKIVL
3GOR Chain:A ((4-144))
---MSRAKKWVQYFLSHRHVTMELIHKIDEAHYDYKPTPTSMTAKQLATHMLFSFYNFANTAKHG---D---PSLF----RQK-----------IEEPETNLAKLAETYTEKTRQLIESMSDDDFDRTLDLTAIFGT-----QMSTAQFLQL-AMDHEIHHKGQLFVYVRGMG
General information:
TITO was launched using:
RESULT:
Template:
3GOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2426 for 1003 contacts (-2.4/contact) +
2D Compatibility (PS) -14235 + (NN) -3888 + (LL) 2388
1D Compatibility (HY) 3600 + (ID) 450
Total energy: -15011.0 ( -14.97 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_3GOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOR-query.scw
PDB file :
Tito_Scwrl_3GOR.pdb
: