Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKCPIIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGPSIIRYIKSLGHRIFLDLKLHDIPNTVRSSMSVLAKLGIDMTNVHAAGGVEMMKAAREGL----GEGPILLAVTQLTSTSQEQMQVDQHINLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKAENPYQAYLEIKEEWNRIK
3LDV Chain:B ((31-251))
------IVALDYDNLADALAFVDKI-DPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQ-GIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPA-------QRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSLV---
General information:
TITO was launched using:
RESULT:
Template:
3LDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135713 for 1694 contacts (-80.1/contact) +
2D Compatibility (PS) -22681 + (NN) -7093 + (LL) 1120
1D Compatibility (HY) -15200 + (ID) 4650
Total energy: -184217.0 ( -108.75 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3LDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDV-query.scw
PDB file :
Tito_Scwrl_3LDV.pdb
: