Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHEHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
3UDV Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR---ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
3UDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130314 for 1134 contacts (-114.9/contact) +
2D Compatibility (PS) -15723 + (NN) -7676 + (LL) 1080
1D Compatibility (HY) -14000 + (ID) 3250
Total energy: -169883.0 ( -149.81 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3UDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDV-query.scw
PDB file :
Tito_Scwrl_3UDV.pdb
: