Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGARTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGAVGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSLMNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIMPRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLVNLVTRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMILGESGREELSDEEIWQALELAQAKEFIEAKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMDADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN |
1MV5 Chain:D ((7-240)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLTV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91251 for 1749 contacts (-52.2/contact) +
2D Compatibility (PS) -25012 + (NN) -5650 + (LL) 33100
1D Compatibility (HY) -22400 + (ID) 4600
Total energy: -115813.0 ( -66.22 by residue)
QMean score : 0.430
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