Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYLTAGESHGPSLTAIIEGIPAGLKLSAKDINEDLKRRQGGYGRGNRMKIETDQVIISSGVRHGKTLGSPITLTVTNKDHSKWLDIMSVEDIEERLKQKRRIKHPRPGHADLVGGIKYRFDDLRNALERSSARETTMRVAIGAIAKRILKE-IGIEIANHIVVFGGKEITVPDKL-TVQQ------IKVLSSQSQVAIVNPSFEQEIKDYIDSVKKAGDTIGGVIETIVGGVPVGLGSYVHWDRKLDAKIAQAVVSINAFKGVEFGLGFKSGFLKGSQVMDSISWTKDQGYIRQSNNLGGFEGGMTNGEPIIVRGVMKPIPTLYKPLMSVDIDTHEPYRATVERSDPTALPAAGVVMEAVVATVLVTEVLEKFSSDNMYELKEAVKLYRNYVNHF |
1R53 Chain:A ((8-371)) | FRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRP------------DRVEIQSGTEFGKTLGTPIAMMIKN-------------------------------------------------------RETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEP--CFDKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFY-------RTKTNNSGGVQGGISNGENIYFSVPFKSV-----------------------RHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148873 for 2245 contacts (-66.3/contact) +
2D Compatibility (PS) -29858 + (NN) -18406 + (LL) 7264
1D Compatibility (HY) -14000 + (ID) 4900
Total energy: -208773.0 ( -92.99 by residue)
QMean score : 0.486
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