Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVALIPEKCIACGLCQTYSN--IFDYQDDGIVKFSDTDNLEKEVPNSDQDTV---------LAVKSCPTKALTIL
1KQF Chain:B ((126-186))
--VDFQSENCIGCGYCIAGCPFNIPRLNKEDNR------------VYKCTLCVDRVSVGQEPACVKTCPTGAIHFG
General information:
TITO was launched using:
RESULT:
Template:
1KQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15374 for 227 contacts (-67.7/contact) +
2D Compatibility (PS) -5039 + (NN) -994 + (LL) 900
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -24457.0 ( -107.74 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1KQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQF-query.scw
PDB file :
Tito_Scwrl_1KQF.pdb
: