Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAEKGAYYNADSMINSLV--RRGLGDPAALESR-IPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLREPKHSRARKERQEVITWVE
1NOX Chain:A ((6-204))
-----PVLDAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPAT---KRALREAAFGQA-HVEEAPVVLVLYADLE-----DALAHLDEVIHPGVQG-ERREAQKQAIQRA-----FAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGL----P-SRAAIPALVALGYPAEEG-YPSHRLPLERVVLWR-
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77576 for 1389 contacts (-55.9/contact) +
2D Compatibility (PS) -20938 + (NN) -4398 + (LL) 1728
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -113684.0 ( -81.85 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: