Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
1VHL Chain:B ((6-179))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQ--IQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHY
General information:
TITO was launched using:
RESULT:
Template:
1VHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61164 for 1255 contacts (-48.7/contact) +
2D Compatibility (PS) -19173 + (NN) -10230 + (LL) 348
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -104069.0 ( -82.92 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1VHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHL-query.scw
PDB file :
Tito_Scwrl_1VHL.pdb
: