Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIRLKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIESTEEFGPYYILM---PGMAMPHARPEAGVKRDAFSLITLTEPVVFPDG------KEVSVLLALAATSSAIHTSVAIPQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
3T43 Chain:A ((3-136))
--------------------SQNDIIKALASPLINDGMVVSDFADHVITRE-QNAPT-GLPVEPVGVAIPHTDSK-YVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITN-VLWWIMDVIQDADFMQQLLVMNDD-EIYQSIYTRISEAAGMAGIHFR
General information:
TITO was launched using:
RESULT:
Template:
3T43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92448 for 910 contacts (-101.6/contact) +
2D Compatibility (PS) -13473 + (NN) -1350 + (LL) 2292
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -114229.0 ( -125.53 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_3T43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T43-query.scw
PDB file :
Tito_Scwrl_3T43.pdb
: