Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MVKVLTACGNGMGSSMVIKMKVENALRQLGVSNFESASCSVGEAKGL-AANYDIVVASNHLIHELDG-RTKGHLVG-----------LDNLMDDNEIKTKLQEIL-
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLAN-AINEGANLTEV-RVIANSGAYGAHYDIMG-VYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29636 for 626 contacts (-47.3/contact) +
2D Compatibility (PS) -9729 + (NN) -4191 + (LL) 324
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -46632.0 ( -74.49 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: