Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
3VE5 Chain:A ((14-194))
-----------------PGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV
General information:
TITO was launched using:
RESULT:
Template:
3VE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101597 for 1278 contacts (-79.5/contact) +
2D Compatibility (PS) -19934 + (NN) -16379 + (LL) 1340
1D Compatibility (HY) -22400 + (ID) 6000
Total energy: -164970.0 ( -129.08 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3VE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VE5-query.scw
PDB file :
Tito_Scwrl_3VE5.pdb
: