Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSLHDDERLDYLLAEDMKI---------IQSPTVFAFSLDAVLLSKFAYVPIQKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNKLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKTPKQTEQNMNEHLRIARHEIHCTLEDVISVSSKLLKQGGKAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQNEYTKEIRTILYGD--K
3GDH Chain:B ((25-235))
--EIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFL---KADVVFLSPPWGGPDYATAETFD-------------IRTMM------------------SPDGFEIFRLSKKIT---NNIVYFLPRNADIDQVASLAGPGG--------QVEIEQNFLNNKLKTI-TAYFGDLIR
General information:
TITO was launched using:
RESULT:
Template:
3GDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76335 for 1644 contacts (-46.4/contact) +
2D Compatibility (PS) -21350 + (NN) -12419 + (LL) 3540
1D Compatibility (HY) -10400 + (ID) 1800
Total energy: -118764.0 ( -72.24 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3GDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GDH-query.scw
PDB file :
Tito_Scwrl_3GDH.pdb
: