Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQTDDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDPPIPGHYKSVAIEITRKKS
5F3M Chain:B ((5-122))
-DKIYIHDMEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER-
General information:
TITO was launched using:
RESULT:
Template:
5F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 35518 for 810 contacts (43.8/contact) +
2D Compatibility (PS) -12515 + (NN) -6936 + (LL) 272
1D Compatibility (HY) 8000 + (ID) 350
Total energy: 23989.0 ( 29.62 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_5F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F3M-query.scw
PDB file :
Tito_Scwrl_5F3M.pdb
: