Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKVLFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES
5DM6 Chain:J ((6-139))
----KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYD------
General information:
TITO was launched using:
RESULT:
Template:
5DM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35024 for 916 contacts (-38.2/contact) +
2D Compatibility (PS) -14390 + (NN) -4330 + (LL) 320
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -69874.0 ( -76.28 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_5DM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM6-query.scw
PDB file :
Tito_Scwrl_5DM6.pdb
: