Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLPKEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIGPLGEQLILHHFL
4PV6 Chain:C ((8-139))
-AVAGTIREFSPKDIESVYRIAQTSLTEYYT---QALILDLHREWPESFMVYTVAGSVVGFIVGSKY-SR--------TEARILLFAVDERFRRMGVGSALMDAFLSLCREQ--NMLSVRLEVRTDNDEAIRFYKKYGFVITAMLPN-------------
General information:
TITO was launched using:
RESULT:
Template:
4PV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95314 for 927 contacts (-102.8/contact) +
2D Compatibility (PS) -14645 + (NN) -8813 + (LL) 1196
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -122026.0 ( -131.64 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4PV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PV6-query.scw
PDB file :
Tito_Scwrl_4PV6.pdb
: