Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGITSVLTKDNVKKIDTDIDVQERDLNVFITSASRVIAPLWPISTFAARNPWMGLENQPFDQVASWLKNTRDVDIYPSAS-------MIRSAKNKGEID-----------EDFVEMGLQRWLDSHSYHIPRDVAERFCHAALKLDPLPSDLLSSHELEK---LVSECSGLDHIENVFMQP-----------------LSSYIENQDGE-RLVNILDHHVIKWSKLYLDDS----QAGWTMPNREEGFYRAWQHLIQYDPALSKKQRERVKGWPKEAHLA---LQEALFALEIPESEIQTYLEGH--LLSLP-GWAGMM-LWRSQQSSHEHALLTEYL-AV-----RISMEWALIKPYLP--LTNERSKKTISIAPLIAAWIHWGGLT----LEEWSQMTA-SEQNEYLSFAYSFDEKLRKKL--WLEAWEQTYTD-RLSQKIISKQRETGREKSALAQLAFCIDVRSE------PFRRQLEKEGPFETIGIAGF---------------------------FGVPIA---TCELGSKHSHASLP---IIQKPQ--NKIKEFAD-EDVFKK-----------YNQRKQAIHSLSHTFKTMKQNALSSLLLPELSGPWLTLQMAARSFVPRK-AGRFIRNLREAWLRKPDTKLSLHHDATEAEIPV-GFTDEEKVNYARQALKMMGLTENIAPLVVICGHGSQS-TNNPYSAALDCGACGGAAGGFNARVLAAL---CNLSEVREALLAEGI-----KIPEDTVFAAAEHNTTVDELHWL----YVPELS-EAAQEAFEQIEAVMPKVRHHVNAERLAQLPNFQSKLKNP------KAEANRFAEDWSEIR-PEWGLARNAAFI-IGKRELTQDCDLEGRAFLHNYDW--KQDESGELL---------ANIIVG-PGTVAQWINLQYYASTVA-PHYYGSGNKAT-QTVTAGLGVMQGNASDLLAGLPWQSV-MESDHEAYHSPLR--LLI-LI----QAPREYVERL------LN--HDSAFLQKVQNGWVRLASLDPEGCWESW-------------------------------------- |
2YOC Chain:A ((20-1070)) | ---DVVVRLPDVAVPGEAVTAVENQAVIHLVDIAGITSS--SAADYSSKNLYLW-NNETCDALSAPVADWNDVSTTPSGSDKYGPYWVIPLNKESGCINVIVRDGTDKLIDSDLRVAFGDFTDRTVSVIAGNSAVYDSRADAFRAAFGVALAEAHWVDKNTLLWPGGQDKPIVRLYYSHSSKVAADGEGKFTDRYLKLTPTTVSQQVSMRFPHLSSYAAFKLPDNANVDELLQGETVAIAAAEDGILISATQ--VQTAGVLDDAYAEAAEALSYGAQLADGGVTFRVWAPTAQQVDVVVYSADKKVIGSHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPDGWDNLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAGDSNMVQHLKTLSASGVTHVELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLNQLKQSDSQDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTTRIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAA-GPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKI------DGFRFDL--MGYHPKAQILSAWERIK------ALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDSVRGGGPFDSGDALRQNQGIGSGAGVLPNELASLSDDQVRHLADLTRLGMAGNLADFVMIDKDGAAKKGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKASQEADLATRVRMQAVSLAT----VMLGQ---GIAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRISDDGSNYEVITRVKEMVATPGEAELKQMTAFYQELTELRKS-SPLFTLGDGSAVMKRVDFRNTGSDQQAGLLVMTVDDGMKAGASLDSRLDGLVVAINAAPESRTLNEFAGETLQLSAIQQTAGENSLANGVQIAADGTVTLPAWSVAVLELPQGEAQGAGLPVSS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YOC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 4290 for 6515 contacts (0.7/contact) +
2D Compatibility (PS) -85158 + (NN) 10300 + (LL) 3140
1D Compatibility (HY) -11200 + (ID) 7300
Total energy: -85928.0 ( -13.19 by residue)
QMean score : 0.108
|
|
|