Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSANLTDFVTKTIEEMNS-FDRENMECIKKLIRKAIDFYHLKSYEEVEETHSGNVRFLHVHSMMEENMLSKM-IVVTRNGKTDLDIEGVYEGYVVREY
2HGC Chain:A ((5-82))
---KLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREGY------------IIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKA-----
General information:
TITO was launched using:
RESULT:
Template:
2HGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35389 for 503 contacts (-70.4/contact) +
2D Compatibility (PS) -7752 + (NN) 2466 + (LL) 1720
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -42155.0 ( -83.81 by residue)
QMean score : 0.161
(partial model without unconserved sides chains):
PDB file :
Tito_2HGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HGC-query.scw
PDB file :
Tito_Scwrl_2HGC.pdb
: