Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEKTKLTGRIVTRD--DPDYNEA--RTNINLSL----ERYPDIIVFCQNKQDALNALKWARENRVPFRIRGGRHSYENFSLLN----NGLVIDLSEMKKITVNQDKKLAYIEAGAELGEVYRTLWQY--GLTLPAGTIANVGLTGLTLGGGIGLLTRAAGLTCDSLVQLEMIVADEKEGADLITVSCSNHPDLFWASQGGGGGNFGIVTSMTFKAVPISQ-VSIFSITWGW-DDFEEVYNTWQNWAPYTDDRLTSSIEFWPK----EVNRIEALGQFVGPKTELKKLLKPLL-KAGSPTSGMVKTTPFIEAVTFFNS------PG----GN--QPQKMKRSGSFIEKPLSERAISTIKHFLEHAPNQNASVWQQALGGAAGRVAPDQTAFYYRDA-IIAQEYLTNWTSPGE-KRQNVRWIEGLRTSLSKE----TMGDYVNWPDIEI---------RNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIPPLRRSLFF
4UD8 Chain:A ((52-530))----------FSPDQNATLFKEELESTAQNLRYLTPSNPKPVFIFEPLYETHVQAAVVCAKKLQLHLRLRSGGHDYEGLSFVAEDETPFVIVDLSKLRQVDVDLDSNSAWAHAGATIGEVYYRIQEKSQTHGFPAGLCSSLGIGGHLVGGAYGSMMRKFGLGADNVLDARIVDANGQ----ILDRAA-MGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGL-TKKDCTEMSWIKSVMYIAGFPNSAAPEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEE--DSPLTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGKVSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNEGETDAREWGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVPTK------


General information:
TITO was launched using:
RESULT:

Template: 4UD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2593 -190204 -73.35 -445.44
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -73.35
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.460

(partial model without unconserved sides chains):
PDB file : Tito_4UD8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4UD8-query.scw
PDB file : Tito_Scwrl_4UD8.pdb: