Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKAVIAKNEEQLKDAFYVREEVFVKEQN-VPAEEE-I-DE-LENESEHIVVYDGEKPVGAGRWRMK----------------DGYGKLERICVLKSHRSAGVGGIIMKALEKAAAD-GGASGFILNAQTQAVPFYKKHGYRVLSEKE-FLDAGIPHLQMMKD
1CJW Chain:A ((8-164))---FRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPA-GPCAIVVGSLTFTEMHC-


General information:
TITO was launched using:
RESULT:

Template: 1CJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 606 -95614 -157.78 -708.25
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -157.78
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.402

(partial model without unconserved sides chains):
PDB file : Tito_1CJW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1CJW-query.scw
PDB file : Tito_Scwrl_1CJW.pdb: