Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNR---FDLYHWNMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVL---QKQLGPVNR-VLTVPFTDEIDYVYDTGRYELHFVIGTDQTADHVNLKAK
4DY5 Chain:A ((1-111))-------------------------------------------------------------------------TGKNVNVEFDKGQNSARYSGVIKGYDYDTYNFQA-RKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDGNGQYTLPASGKYELKVLQTRNEARKNKAKKYSVNIQIK-------------


General information:
TITO was launched using:
RESULT:

Template: 4DY5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 466 -27294 -58.57 -262.44
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -58.57
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.232

(partial model without unconserved sides chains):
PDB file : Tito_4DY5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DY5-query.scw
PDB file : Tito_Scwrl_4DY5.pdb: