Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGA-EIVSPGSVLVSGRLLSDITRALPNK-PVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLP-EETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSA-GADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG |
4K3L Chain:A ((1-365)) | ------------MKFTVEREHLLKPLQQVS---------PILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQS--LPSHSVIVPRKGVIELMRMLD--NPLRVQIG-------SNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQ-EEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAAS------------------QSAAYVVMPMR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K3L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -272145 for 2761 contacts (-98.6/contact) +
2D Compatibility (PS) -37511 + (NN) -14184 + (LL) 256
1D Compatibility (HY) -21600 + (ID) 4900
Total energy: -350084.0 ( -126.80 by residue)
QMean score : 0.618
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