Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERA-GASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPDPFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWLTCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
2A9V Chain:A ((14-207))
LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSS-----ELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEII--NLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYREIQK--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137399 for 1666 contacts (-82.5/contact) +
2D Compatibility (PS) -20229 + (NN) -4644 + (LL) 2104
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -172818.0 ( -103.73 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: