Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MEPKRS-RLVVCAPEPSHAR--EFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARV----RLTMANCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTP--AEALVTRRKPVVLRRATPLQAIAAMDAMDYDVHLFTD--AETGEDAVVYRAGPSG----LRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPV----LTEAAAVDRAREHGLPFLFFTDQ-----ATGRGQLL--------------------YSRYDGNLGLITPTGDGVADGLA |
| 2GOP Chain:A ((10-347)) | TFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATM-PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREVPAWEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVV---NVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFAKL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GOP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12417 for 1864 contacts (-6.7/contact) +
2D Compatibility (PS) -27717 + (NN) 2424 + (LL) 712
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -47348.0 ( -25.40 by residue)
QMean score : 0.063
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