Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGNGTVQATVSTTVEVEGSAKPACVAESIVRYVA
5CPG Chain:A ((2-138))
QVQNIPYAELE--VGQKAE--YTSSIAERDLQLFAAVSGDRNPVHLDAAYAATTQFKERIAHGMLSGALISAAIATV--L-P-GPGTIYLGQTLRFTRPVKLGDDLKVELEVLEKLPK----NRVRMATRVFNQAG-KQVVDGEAEIMAP-
General information:
TITO was launched using:
RESULT:
Template:
5CPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61360 for 1019 contacts (-60.2/contact) +
2D Compatibility (PS) -14927 + (NN) -3613 + (LL) 696
1D Compatibility (HY) -3600 + (ID) 1550
Total energy: -84354.0 ( -82.78 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_5CPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CPG-query.scw
PDB file :
Tito_Scwrl_5CPG.pdb
: