Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGISRRTFGLAAGFGAIGAGGLGGGCSTRSGPTPTPEPASRGVGVVLSHEQ------------FRTDRLVAHAQAAEQAGFRYVWASDHLQPWQD-NEGHSMFPWLTLALVGNSTSSILFGTGVTCPIYRYHPATVAQAFASLAILNPGRVFLGLGTGERLNEQAATDTFGN----YRERHDRLIEAIVLIRQLWSGERISFTGHYFRTDELKLYDTPAM--PPPIFVAASGPQSATLAGRYGDGWIAQARDI-NDAKLLAAFAAGAQAAGRDPTTLGKRAELFAVVGDDKAAARAADLWRFTAGAVDQPNP----VEIQRAAE--SNPIEKVLANWAVGTDPGVHIGAVQAVLDAGAVPFLHFPQDDPITAIDFYRTNVLPELR |
| 3RAO Chain:A ((18-363)) | -------------------------------------YFQGVEYGFWLPIFGGWLRNVNDESMPPTFEYAKQTAQAAEQLGFSTTLIAELNLNDIKGVSAPSLEAWTTAAALAAVTDRLEIMTAVR-PGF-HNPAVTAKMAANIDQLSNGRFTLNVVSAWWEEEAK---QYGGVFTAHDERYDRTEEFVTILKGLWKEEEFSYKGNFYELHHTHLSPKPVQKQGIKLYAGGESKRGKEVIVNHADAYVMHGGTVEEVSVKIEDMKNRRKKVTEEPLQ-SFGLAAYVICRHTEEEALEEWRRIT-DVK------FVSKSQLEQQVKLNDYSVSNRGLRPNLIGTPEQIAERILAFEKVGVTLLLLQF-SPQLEEMKRFSEKVMPLVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RAO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168658 for 2497 contacts (-67.5/contact) +
2D Compatibility (PS) -33801 + (NN) -22533 + (LL) 528
1D Compatibility (HY) -4000 + (ID) 2450
Total energy: -230914.0 ( -92.48 by residue)
QMean score : 0.495
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