Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGVQDRVIVVTGAGGGLGREYALTLAGEGASVVVNDLGGARDGTGA-GSAMADEVVAEIRDKGGRAVANYDSVATEDGAANIIKTALDEFGAVHGVVSNAGILRDGTFHKMSFENWDAVLKVHLYGGYHVLRAAWPHFREQSY------GRVVVATSTSGLFGNFGQTNYGAAKLGLVGLINTLALEGAKYNIHANALAPIAATRMTQDILPPEVLEKLTPEFVAPVVAYLCTEECAD-NASVYVVGGGKVQRVALFGNDGANFDKPPSVQDVAARWAEITDLSGAKIAGFKL
3QLJ Chain:D ((25-297))
---VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSARTRMTETVFAE--FDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKI-RVAEGWAHGPQIDK-------GARW----------------
General information:
TITO was launched using:
RESULT:
Template:
3QLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159783 for 2187 contacts (-73.1/contact) +
2D Compatibility (PS) -27844 + (NN) -12900 + (LL) 1592
1D Compatibility (HY) -15600 + (ID) 5850
Total energy: -220385.0 ( -100.77 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3QLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QLJ-query.scw
PDB file :
Tito_Scwrl_3QLJ.pdb
: