Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTG-PSARELAQTRTVQQVRDLARDRGR----QMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAPV-GVMVGHLQVPGLTGSEPASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKE-VPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4GVH Chain:B ((57-292)) | ---------------------------------------------------------------------------------------------------------------------LVVAVDQEGGRVQRFRE--GFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHIS--AAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVT-----ETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAID-PRPASGSPYWLKTVLRQELG-----FDGVIFSDDLS-------SY--AERAQASLDAGCDMILVCNNRKGAVSVLDNL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83499 for 1828 contacts (-45.7/contact) +
2D Compatibility (PS) -23449 + (NN) -14762 + (LL) 8080
1D Compatibility (HY) -14000 + (ID) 4150
Total energy: -131780.0 ( -72.09 by residue)
QMean score : 0.400
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