Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDP-------RVSVPVYPARVTPEGRIQVARVAV
2ZYL Chain:A ((21-133))
----RYARGWHCLGVAKDYLEGKPHGVEA-FGTKLVVFADSHGDLKVLDGYCRHMGG-DLSEGTVKG----DEVACPFHDWRWGG-DGRCKLVPYARRTPRMARTRSWTTDVRS-GLLFVWHD--
General information:
TITO was launched using:
RESULT:
Template:
2ZYL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54927 for 766 contacts (-71.7/contact) +
2D Compatibility (PS) -11801 + (NN) -7361 + (LL) 900
1D Compatibility (HY) -400 + (ID) 1000
Total energy: -74589.0 ( -97.37 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_2ZYL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZYL-query.scw
PDB file :
Tito_Scwrl_2ZYL.pdb
: