Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGLPLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
1SPF Chain:A ((11-32))
-------------------KRLLVVVVVVVLVVVVIVGALL---------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12621 for 79 contacts (-159.8/contact) +
2D Compatibility (PS) -2349 + (NN) -3303 + (LL) 7540
1D Compatibility (HY) -4400 + (ID) 250
Total energy: -15383.0 ( -194.72 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1SPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SPF-query.scw
PDB file :
Tito_Scwrl_1SPF.pdb
: