Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPR--YADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG
5PGM Chain:C ((2-235))
-----KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKP-SKPSYYLDPEAAAA-----------
General information:
TITO was launched using:
RESULT:
Template:
5PGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102538 for 1929 contacts (-53.2/contact) +
2D Compatibility (PS) -25439 + (NN) -18048 + (LL) 628
1D Compatibility (HY) -20800 + (ID) 7400
Total energy: -173597.0 ( -89.99 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_5PGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PGM-query.scw
PDB file :
Tito_Scwrl_5PGM.pdb
: