Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLARLRGRRVVPQRSAGELDAMAAAGAVVAAALRAIRAAAAPGTSSLSLDEIA-ESVIRESGATPSFLGYHGYPASICASINDRVVHGIPSTAEVLAPGDLVSIDCGAVLDGWHGDAAITFGVGALSDADEALSEATRESLQAGIAAMVVGNRLTDVAHAIETGTRAAELRYGRSFGIVAGYGGHGIGRQMHMDPFLPNEGAPGRGPLLAAGSVLAIEPMLTLGTTKTVVLDDKWTVTTADGSRAAHWEHTVAVTDDGPRILTLG
2GGC Chain:A ((5-249))
---------------KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA------EGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL-
General information:
TITO was launched using:
RESULT:
Template:
2GGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118664 for 2125 contacts (-55.8/contact) +
2D Compatibility (PS) -26847 + (NN) -13186 + (LL) 1528
1D Compatibility (HY) -18000 + (ID) 4700
Total energy: -179869.0 ( -84.64 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2GGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGC-query.scw
PDB file :
Tito_Scwrl_2GGC.pdb
: