Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
2LFW Chain:A ((2-146))
-------------SLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPR-DVDPRLGLYRMFQGIWASANADGEAQTSQ----------------SDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALEL--
General information:
TITO was launched using:
RESULT:
Template:
2LFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54322 for 995 contacts (-54.6/contact) +
2D Compatibility (PS) -15389 + (NN) -3541 + (LL) 1360
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -76692.0 ( -77.08 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2LFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LFW-query.scw
PDB file :
Tito_Scwrl_2LFW.pdb
: