Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLNRFGAAVGVLAAGALVLSACGNDDNVTGGGATTGQASAKVDCGGKKTLKASGSTAQANAMTRFVNVFEQACPGQTLNYTANGSGAGISEFNGNQTDFGGSDVPLSKDEAAAAQRRCGSPAWNLPVVFGPIAVTYNLNSVS-SLNLDGPTLAKIFNGSITQWNNPAIQALNRDFTLPGERIHVVFRSDESGTTDNFQRYLQAASNGAWGKGAG----KSFQGG-VGEGARGNDGTSAAAKNTPGSITYNEWSFAQA---QHLTMANIVTSAGGDPVAITIDSVGQTIAGATISGVGNDLVLDTDSFYRPKRPGSYPIVLATYEIVCSKYPDSQVGTAVKAFLQSTI-GAGQ-SGLGDNGYIPIPDEFKSRLSTAVNAIA |
1PC3 Chain:A ((20-348)) | -----------------------------------------TTPASSPVTLAETGSTLLYPLFNLWGPAFHERYPNVTITAQGTGSGAGIAQAAAGTVNIGASDAYLSEGDMAAH-----KGLMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSDGSGDTFLFTQYLSKQDPEGWGKSPGFGTTVDFPAVPGALGENGNGGMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGN-SSGNFLLPDAQSIQAAAAGFASKT--PA-NQ-AISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAFLHWAITDGNKASFLDQVHFQPLPPAVVKLSDALIATI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89189 for 2852 contacts (-31.3/contact) +
2D Compatibility (PS) -34872 + (NN) -16333 + (LL) 2220
1D Compatibility (HY) -14000 + (ID) 4600
Total energy: -156774.0 ( -54.97 by residue)
QMean score : 0.407
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