Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNH--GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEH-RRTEIARIVEQMAPAERHGLVRALTAFTEAGGEPDARYEIE
3ZMD Chain:A ((28-174))
-------RWLTDTEQCAWRTHLEVNRLLTHQLEKDLQP--FGLTMNDYEILVNLSESEGDRMRMSDLATATMQSKSRLSHQITRMENANLVRRENCESDRRGLFAVLTEHGLETMRKVAPHHVASVRRHFIDLLAPEDLTELDKALKPIAEHLRGQ-------
General information:
TITO was launched using:
RESULT:
Template:
3ZMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60211 for 884 contacts (-68.1/contact) +
2D Compatibility (PS) -14774 + (NN) -4064 + (LL) 1172
1D Compatibility (HY) -5600 + (ID) 1650
Total energy: -85127.0 ( -96.30 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3ZMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZMD-query.scw
PDB file :
Tito_Scwrl_3ZMD.pdb
: