Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRLDPSRCVGHA-----QCYAVDP-DLFPIDDSGNSILAEHEVRPEDMQLTRDGVAACPEMALILEEDDAD
3GYX Chain:B ((2-65))
--TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFN---QEPEACWECYSCIKICPQGAITARP----
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33875 for 386 contacts (-87.8/contact) +
2D Compatibility (PS) -5882 + (NN) -3356 + (LL) 440
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -45423.0 ( -117.68 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: