Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTLTVADFALRLAVGVGCGAIIGLERQWRARMAGLRTNALVATGATLFVLYAVATEDSSPTRVASYVVSGIGFLGGGVILREGFNVRGLNTAATLWCSAAVGVLAASGHLVFTLIGTGTIVAVHLLGRPLGRLVDRDNAVEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQAE
2LQJ Chain:A ((141-233))
--------------------------------------------------------------------------------------------------------------------------------------------VEDEGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYAGEHAQA-
General information:
TITO was launched using:
RESULT:
Template:
2LQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61233 for 666 contacts (-91.9/contact) +
2D Compatibility (PS) -10133 + (NN) -3109 + (LL) 10524
1D Compatibility (HY) -12000 + (ID) 4650
Total energy: -80601.0 ( -121.02 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_2LQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQJ-query.scw
PDB file :
Tito_Scwrl_2LQJ.pdb
: