Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALA-LQGSGFDFSNDEIESFSDTDRKLADES
4ZDT Chain:B ((1-69))
-GSMIVTQTHRAISQVVKQAKDN-----------SVWIKILTYSAIDVEEFQLWLKRKNLNVSLDLIKSWCDKYGVLMKGS
General information:
TITO was launched using:
RESULT:
Template:
4ZDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1691 for 425 contacts (4.0/contact) +
2D Compatibility (PS) -7274 + (NN) -1647 + (LL) 1152
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -10428.0 ( -24.54 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_4ZDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZDT-query.scw
PDB file :
Tito_Scwrl_4ZDT.pdb
: