Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYA--ALPKLPSFSLTSTS---ITDGQPLATPQVSGIMGAGGADASPQLRWSGF--------PSETRSFAVTVYDPDAPTL-----SGFWHWAVANLPANVTELPEGVGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
1WPX Chain:B ((21-177))
---LEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKAR---------SKPQFQFTFNKQMQNAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLN---------T-EFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPK-GVDSS-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1WPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45861 for 775 contacts (-59.2/contact) +
2D Compatibility (PS) -13193 + (NN) -6238 + (LL) 2848
1D Compatibility (HY) -4800 + (ID) 1500
Total energy: -68744.0 ( -88.70 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_1WPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WPX-query.scw
PDB file :
Tito_Scwrl_1WPX.pdb
: