Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGA-DTLLLLEHPAVYTAGRRTETH-ERP-----IDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVP--------CGIS--DAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVGDRVPSHAVPSPL
1VQZ Chain:A ((14-222))
------------KYIINHSNDTAFNIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNN-LNYTIISKED-ENKAFDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG---KKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101500 for 1421 contacts (-71.4/contact) +
2D Compatibility (PS) -21028 + (NN) -7207 + (LL) 1304
1D Compatibility (HY) -9200 + (ID) 2000
Total energy: -139631.0 ( -98.26 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1VQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQZ-query.scw
PDB file :
Tito_Scwrl_1VQZ.pdb
: