Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRL-ADLIGDGA--VALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
4NOG Chain:B ((239-417))
LIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVVPISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSF-----
General information:
TITO was launched using:
RESULT:
Template:
4NOG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107227 for 1208 contacts (-88.8/contact) +
2D Compatibility (PS) -18745 + (NN) -5744 + (LL) 204
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -147862.0 ( -122.40 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_4NOG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NOG-query.scw
PDB file :
Tito_Scwrl_4NOG.pdb
: