Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRM------NIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALSPS
1P8C Chain:A ((10-93))
--------------------------------------------------------------------------------RRELNEK------VLSRGTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGS-------------
General information:
TITO was launched using:
RESULT:
Template:
1P8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27251 for 457 contacts (-59.6/contact) +
2D Compatibility (PS) -8572 + (NN) -5537 + (LL) 8184
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -36776.0 ( -80.47 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1P8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P8C-query.scw
PDB file :
Tito_Scwrl_1P8C.pdb
: