Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLDLH
1YL7 Chain:D ((2-245))
-RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLDLH
General information:
TITO was launched using:
RESULT:
Template:
1YL7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165535 for 1930 contacts (-85.8/contact) +
2D Compatibility (PS) -26869 + (NN) -17714 + (LL) 208
1D Compatibility (HY) -30800 + (ID) 12200
Total energy: -252910.0 ( -131.04 by residue)
QMean score : 0.804
(partial model without unconserved sides chains):
PDB file :
Tito_1YL7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YL7-query.scw
PDB file :
Tito_Scwrl_1YL7.pdb
: