Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVV--GTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
2VXP Chain:A ((503-632))
---------------------------------------------------------GTVMDVLKGDNRFSMLVAAIQS-----AGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNGVVHVITNVL----
General information:
TITO was launched using:
RESULT:
Template:
2VXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86709 for 982 contacts (-88.3/contact) +
2D Compatibility (PS) -13489 + (NN) -3658 + (LL) 3652
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -110104.0 ( -112.12 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_2VXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXP-query.scw
PDB file :
Tito_Scwrl_2VXP.pdb
: