Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALG-FLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVV------GSVAIYLAYVAGLTLVVGV--LAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGV---GANPQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR |
| 4MB0 Chain:A ((9-261)) | PRYWSLYYREKIIEGMEKGMTAKAGLIAHGRGEAFDYLI-----GERTIEPAERAMRAAVAKLLLAENPVVSVNGNVAALVPKETIELARALN-AKLEINLFYRTEDRVKAIAEELRKYDPEI------------ELLGINPTKRIPGLEHERG---KVDENGIWKADVVVVPLEDGDRTEALVRMGKFVITIDLNPLSRSARMADITIVDNIVRAYPRMTELAREMK--------DYSRGELIRIIEEYDNGKTLNDVLLHIRDRLTKLAEG-----------------------GIWRKKQLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MB0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218238 for 1877 contacts (-116.3/contact) +
2D Compatibility (PS) -24773 + (NN) -2605 + (LL) 4368
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: -249248.0 ( -132.79 by residue)
QMean score : 0.202
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