Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSG-PEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
1NVJ Chain:C ((11-128))
-----------------QPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG---NALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKRE-------------
General information:
TITO was launched using:
RESULT:
Template:
1NVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83856 for 803 contacts (-104.4/contact) +
2D Compatibility (PS) -12660 + (NN) -10147 + (LL) 1652
1D Compatibility (HY) -7200 + (ID) 2250
Total energy: -114461.0 ( -142.54 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1NVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVJ-query.scw
PDB file :
Tito_Scwrl_1NVJ.pdb
: