Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
2RDV Chain:A ((2-50))
----KKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFE-------
General information:
TITO was launched using:
RESULT:
Template:
2RDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11781 for 289 contacts (-40.8/contact) +
2D Compatibility (PS) -5163 + (NN) -5051 + (LL) 1056
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -25439.0 ( -88.02 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2RDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDV-query.scw
PDB file :
Tito_Scwrl_2RDV.pdb
: