Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
3MPZ Chain:B ((23-143))
---VNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLIDHAHGPRPLRELLPDAFG---------
General information:
TITO was launched using:
RESULT:
Template:
3MPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89921 for 969 contacts (-92.8/contact) +
2D Compatibility (PS) -13146 + (NN) -6754 + (LL) 456
1D Compatibility (HY) -15200 + (ID) 4600
Total energy: -129165.0 ( -133.30 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_3MPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MPZ-query.scw
PDB file :
Tito_Scwrl_3MPZ.pdb
: