Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGL-LDSGVVDTVVVAVPADRTDEARQILGHR-AMIVAGGSNRTDTVNLALTVLS--GTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANG-VVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
4ZDQ Chain:D ((9-234))
------RLFALIPCA---------LPKQYRTLAGRALLHYTLAAFDACSEFAQTLVVISPDDAHFDARRFAGLRFAVRRCGGASRQASVMNGLIQLAEFGATDADWVLVHDAARPGITPALIRTLIGALKDDPVGGIVALPVADTLKRVPAGGDAIERTESRNGLWQAQTPQMFRIGMLRDAIQRAQLE--GRDLTDEASAIEWAGHTPRVVQGSLRNFKVTYPEDFDLAEAIL--
General information:
TITO was launched using:
RESULT:
Template:
4ZDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137263 for 1682 contacts (-81.6/contact) +
2D Compatibility (PS) -23121 + (NN) -9952 + (LL) 712
1D Compatibility (HY) -11200 + (ID) 3900
Total energy: -184724.0 ( -109.82 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_4ZDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZDQ-query.scw
PDB file :
Tito_Scwrl_4ZDQ.pdb
: