Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4RHU Chain:E ((16-201))
------------------------------ELYPGDIKSVLLTAEQIQARIAELGEQIGNDYR-----TGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSS------------ILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
General information:
TITO was launched using:
RESULT:
Template:
4RHU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152737 for 1293 contacts (-118.1/contact) +
2D Compatibility (PS) -18288 + (NN) -6217 + (LL) 2656
1D Compatibility (HY) -27200 + (ID) 8450
Total energy: -210236.0 ( -162.60 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_4RHU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHU-query.scw
PDB file :
Tito_Scwrl_4RHU.pdb
: